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end#=TODO: Write tests for GetVisitPlaceOfServiceOnly needs one or two tests; may be difficult to test as I do not think Eunomia has anything other than missinglabels: tests, good first issueassignees: VarshC=#"""GetVisitPlaceOfService(visit_ids, conn; tab = visit_occurrence, join_tab = care_site)Given a list of visit IDs, find their place of service # Arguments:- `visit_ids` - list of `visit_id`'s; each ID must be of subtype `Integer`- `conn` - database connection using DBInterface# Keyword Arguments:- `tab` - the `SQLTable` representing the Condition Occurrence table; default `visit_occurrence`- `join_tab` - the `SQLTable` representing the Person table; default `care_site`# Returns- `df::DataFrame` - a two column `DataFrame` comprised of columns: `:visit_occurrence_id` and `:condition_concept_id`"""functionGetVisitPlaceOfService(
visit_ids,
conn;
tab=visit_occurrence,
join_tab=care_site
)
df = DBInterface.execute(conn, GetVisitPlaceOfService(visit_ids; tab=tab, join_tab=join_tab)) |> DataFrame
return df
end"""GetVisitPlaceOfService(visit_ids; tab = visit_occurrence, join_tab = care_site)Produces SQL statement that, given a list of visit IDs, find their place of service # Arguments:- `visit_ids` - list of `visit_id`'s; each ID must be of subtype `Integer`# Keyword Arguments:- `tab` - the `SQLTable` representing the Condition Occurrence table; default `visit_occurrence`- `join_tab` - the `SQLTable` representing the Person table; default `care_site`# Returns- `sql::String` - Prepared SQL statement as a `String`"""functionGetVisitPlaceOfService(
visit_ids;
tab=visit_occurrence,
join_tab=care_site
)
sql =From(tab) |>Where(Fun.in(Get.visit_occurrence_id, visit_ids...)) |>Select(Get.visit_occurrence_id, Get.care_site_id) |>Join(:join=> join_tab, Get.care_site_id .== Get.join.care_site_id) |>Select(Get.visit_occurrence_id, Get.join.place_of_service_concept_id) |>
q ->render(q, dialect=dialect)
returnString(sql)
endexport GetDatabasePersonIDs, GetPatientState, GetPatientGender, GetPatientRace, GetPatientAgeGroup, GetPatientVisits, GetMostRecentConditions, GetMostRecentVisit, GetVisitCondition, GetPatientEthnicity, GetDatabaseYearRange, GetVisitPlaceOfService
The text was updated successfully, but these errors were encountered:
Only needs one or two tests; may be difficult to test as I do not think Eunomia has anything other than missing
OMOPCDMCohortCreator.jl/src/getters.jl
Line 777 in 3a17f4c
The text was updated successfully, but these errors were encountered: