Merge pull request #353 from VectorInstitute/dbe/bootcamp_materials

Adding in some docs for bootcamp participants

Author: emersodb

.github/workflows/bootcamp_2025_book.yml

@@ -0,0 +1,43 @@
+name: Publish Bootcamp Book
+
+on:
+  push:
+    branches:
+      main
+    paths:
+      - vector-bootcamp-2025/**
+  workflow_dispatch:
+
+jobs:
+  build:
+    name: Build and Deploy Book
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write  # To push a branch
+      pull-requests: write  # To create a PR from that branch
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Setup rust
+        uses: actions-rs/toolchain@v1
+        with:
+          toolchain: stable
+
+      - name: Install mdbook if needed
+        run: |
+          (test -x $HOME/.cargo/bin/mdbook || cargo install --vers "^0.4" mdbook)
+          cargo install mdbook-ai-pocket-reference
+          cargo install mdbook-admonish
+
+      - name: Build books
+        run: |
+          mdbook build vector-bootcamp-2025
+
+      - name: Deploy to github pages
+        uses: JamesIves/[email protected]
+        with:
+          repository-name: VectorInstitute/bootcamp-fl-2025
+          token: ${{ secrets.PAT_VECTOR_BOOTCAMP_FL_2025 }}
+          branch: gh-pages # The branch the action should deploy to.
+          folder: vector-bootcamp-2025/book # The folder the action should deploy.

poetry.lock

@@ -293,6 +293,8 @@ def __call__(self, case: Case) -> Case:
                 case_spacing = scan.GetSpacing()
             else:
                 # check if current scan's metadata is almost equal to the first scan
+                assert case_direction is not None
+                assert case_spacing is not None
                 np.testing.assert_allclose(scan.GetOrigin(), case_origin)
                 np.testing.assert_allclose(scan.GetDirection(), case_direction)
                 np.testing.assert_allclose(scan.GetSpacing(), case_spacing)

research/picai/data/preprocessing.py

@@ -0,0 +1 @@
+book

vector-bootcamp-2025/.gitignore

@@ -0,0 +1,7 @@
+## Welcome to the 2025 Vector FL Bootcamp!
+
+This folder contains several guides to help as you learn the library and work on your federated learning use-cases.
+You can view the guides as markdown files in this folder under `vector-bootcamp-2025/src/`. However, these guides are
+also rendered together and hosted at the https://vectorinstitute.github.io/bootcamp-fl-2025/.
+
+We look forward to working with you!

vector-bootcamp-2025/README.MD

@@ -0,0 +1,22 @@
+[book]
+authors = ["David Emerson <[email protected]>"]
+language = "en"
+multilingual = false
+src = "src"
+title = "Vector FL Bootcamp 2025"
+
+[preprocessor]
+
+[preprocessor.admonish]
+command = "mdbook-admonish"
+assets_version = "3.0.3" # do not edit: managed by `mdbook-admonish install`
+
+[preprocessor.ai-pocket-reference]
+command = "mdbook-ai-pocket-reference"
+
+[output]
+
+[output.html]
+additional-css = ["./mdbook-admonish.css", "./mdbook-ai-pocket-reference.css"]
+git-repository-url = "https://github.com/VectorInstitute/FL4Health"
+git-repository-icon = "fa-github"