Update documentation for the MoClo and Plant kits

Author: althonos

docs/source/index.rst

@@ -43,7 +43,7 @@ Concepts and Definitions
 ------------------------
 
 .. toctree::
-  :maxdepth: 2
+  :maxdepth: 1
 
   concepts/index
   concepts/definitions
@@ -54,7 +54,7 @@ Library
 -------
 
 .. toctree::
-  :maxdepth: 2
+  :maxdepth: 1
 
   install
   examples/index
@@ -67,7 +67,7 @@ Kits
 ----
 
 .. toctree::
-  :maxdepth: 2
+  :maxdepth: 1
 
   kits/moclo/index
   kits/plant/index

docs/source/kits/moclo/index.rst

@@ -46,11 +46,22 @@ Vector
 Parts
 ^^^^^
 
-.. autoclass:: MoCloPromoter(MoCloPart, MoCloEntry)
-.. autoclass:: MoCloUntranslatedRegion(MoCloPart, MoCloEntry)
-.. autoclass:: MoCloSignalPeptide(MoCloPart, MoCloEntry)
-.. autoclass:: MoCloCodingSequence(MoCloPart, MoCloEntry)
-.. autoclass:: MoCloTerminator(MoCloPart, MoCloEntry)
+.. autoclass:: MoCloPro(MoCloPart, MoCloEntry)
+.. autoclass:: MoClo5U(MoCloPart, MoCloEntry)
+.. autoclass:: MoClo5Uf(MoCloPart, MoCloEntry)
+.. autoclass:: MoCloNTag(MoCloPart, MoCloEntry)
+.. autoclass:: MoCloPro5U(MoCloPart, MoCloEntry)
+.. autoclass:: MoCloPro5Uf(MoCloPart, MoCloEntry)
+.. autoclass:: MoCloCDS1(MoCloPart, MoCloEntry)
+.. autoclass:: MoCloCDS1ns(MoCloPart, MoCloEntry)
+.. autoclass:: MoCloSP(MoCloPart, MoCloEntry)
+.. autoclass:: MoCloCDS2(MoCloPart, MoCloEntry)
+.. autoclass:: MoCloCDS2ns(MoCloPart, MoCloEntry)
+.. autoclass:: MoCloCTag(MoCloPart, MoCloEntry)
+.. autoclass:: MoClo3U(MoCloPart, MoCloEntry)
+.. autoclass:: MoCloTer(MoCloPart, MoCloEntry)
+.. autoclass:: MoClo3UTer(MoCloPart, MoCloEntry)
+.. autoclass:: MoCloGene(MoCloPart, MoCloEntry)
 
 
 Level 1

docs/source/kits/plant/index.rst

@@ -4,21 +4,3 @@ Plant Parts Kit
 .. currentmodule:: moclo.kits.plant
 
 .. automodule:: moclo.kits.plant
-
-
-Level 0
--------
-
-Parts
-^^^^^
-
-.. autoclass:: Plant5U(MoCloPart, MoCloEntry)
-.. autoclass:: Plant5Uf(MoCloPart, MoCloEntry)
-.. autoclass:: PlantPro5Uf(MoCloPart, MoCloEntry)
-.. autoclass:: PlantPro5U(MoCloPart, MoCloEntry)
-.. autoclass:: PlantNSignal(MoCloPart, MoCloEntry)
-.. autoclass:: PlantFullCDS(MoCloPart, MoCloEntry)
-.. autoclass:: PlantCDS(MoCloPart, MoCloEntry)
-.. autoclass:: PlantCDSNonStop(MoCloPart, MoCloEntry)
-.. autoclass:: PlantCSignal(MoCloPart, MoCloEntry)
-.. autoclass:: Plant3U(MoCloPart, MoCloEntry)