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Currently, BTE uses the field disgenet.xrefs.umls to retrieve disgenet data because it's the single-namespace disease-ID field that covers the most data: 22574 / 27431 documents with disgenet.
But that's still a good chunk of data that's not accessible: 4857 documents. Today I dug a little more and realized they don't have the parent field disgenet.xrefs either. Instead, the disease ID seems to be in _id only, but with no prefix to say what the ID-namespace is.
I think this may be worth digging into more, and perhaps:
adding the disgenet.xrefs field to all documents with disgenet. Probably would include at least the disgenet.xrefs.umls and disgenet.xrefs.disease_name fields (I think disgenet data is based on disease UMLS IDs?)
adding the ID-prefix to _id
The text was updated successfully, but these errors were encountered:
(EDIT: found while working on biothings/biothings_explorer#900)
Currently, BTE uses the field
disgenet.xrefs.umls
to retrievedisgenet
data because it's the single-namespace disease-ID field that covers the most data: 22574 / 27431 documents withdisgenet
.But that's still a good chunk of data that's not accessible: 4857 documents. Today I dug a little more and realized they don't have the parent field
disgenet.xrefs
either. Instead, the disease ID seems to be in_id
only, but with no prefix to say what the ID-namespace is.I think this may be worth digging into more, and perhaps:
disgenet.xrefs
field to all documents withdisgenet
. Probably would include at least the disgenet.xrefs.umls and disgenet.xrefs.disease_name fields (I think disgenet data is based on disease UMLS IDs?)_id
The text was updated successfully, but these errors were encountered: