We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
1 parent 839a061 commit 509b933Copy full SHA for 509b933
docs/pvacseq/input_file_prep/readcounts.rst
@@ -134,7 +134,7 @@ from a VCF and run bam-readcount. Information on that Docker container can be fo
134
.. code-block:: none
135
136
/usr/bin/python /usr/bin/bam_readcount_helper.py \
137
- <decomposed_vcf> <sample_name> <reference_fasta> <bam_file> <output_dir>
+ <decomposed_vcf> <sample_name> <reference_fasta> <bam_file> NOPREFIX <output_dir>
138
139
This will write two bam-readcount files to the ``<output_dir>``:
140
``<sample_name>_bam_readcount_snv.tsv`` and
0 commit comments