Fix Dockerfile pointer for some env files

Author: Ulthran

.github/workflows/dockerhub.yml

@@ -123,7 +123,7 @@ jobs:
           uses: docker/build-push-action@v5
           with:
             context: .
-            file: workflow/envs/komplexity.Dockerfile
+            file: sunbeam/workflow/envs/komplexity.Dockerfile
             push: true
             tags: ${{ steps.meta.outputs.tags }}
             labels: ${{ steps.meta.outputs.labels }}
@@ -151,7 +151,7 @@ jobs:
           uses: docker/build-push-action@v5
           with:
             context: .
-            file: workflow/envs/qc.Dockerfile
+            file: sunbeam/workflow/envs/qc.Dockerfile
             push: true
             tags: ${{ steps.meta.outputs.tags }}
             labels: ${{ steps.meta.outputs.labels }}

README.md

@@ -1,14 +1,15 @@
-<img src="docs/images/sunbeam_logo.gif" width=120, height=120 align="left" />
+<img src="https://github.com/sunbeam-labs/sunbeam/blob/main/docs/images/sunbeam_logo.gif" width=120, height=120 align="left" />
 
 # Sunbeam: a robust, extensible metagenomic sequencing pipeline 
 
 [![Tests](https://github.com/sunbeam-labs/sunbeam/actions/workflows/pr.yml/badge.svg)](https://github.com/sunbeam-labs/sunbeam/actions/workflows/pr.yml)
 [![Documentation Status](https://readthedocs.org/projects/sunbeam/badge/?version=stable)](https://sunbeam.readthedocs.io/en/stable/?badge=stable)
-[![Release](https://img.shields.io/github/release/sunbeam-labs/sunbeam.svg?style=flat)](https://github.com/sunbeam-labs/sunbeam/releases/latest)
+[![PyPI](https://badge.fury.io/py/sunbeamlib.svg)](https://pypi.org/project/sunbeamlib/)
+[![Bioconda](https://anaconda.org/bioconda/sunbeamlib/badges/downloads.svg)](https://anaconda.org/bioconda/sunbeamlib/)
 [![DockerHub](https://img.shields.io/docker/pulls/sunbeamlabs/sunbeam)](https://hub.docker.com/repository/docker/sunbeamlabs/sunbeam/)
 [![DOI:10.1186/s40168-019-0658-x](https://img.shields.io/badge/Published%20in-Microbiome-1abc9c.svg)](https://doi.org/10.1186/s40168-019-0658-x)
 
-Sunbeam is a pipeline written in [snakemake](http://snakemake.readthedocs.io) that simplifies and automates many of the steps in metagenomic sequencing analysis. It uses [conda](http://conda.io) to manage dependencies, so it doesn't have pre-existing dependencies or admin privileges, and can be deployed on most Linux workstations and clusters. Sunbeam was designed to be modular and extensible, allowing anyone to build off the core functionality. To read more, check out [our paper in Microbiome](https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-019-0658-x).
+Sunbeam is a pipeline written in [snakemake](http://snakemake.readthedocs.io) that simplifies and automates many of the steps in metagenomic sequencing analysis. It can be installed through PyPi (pip), Bioconda (conda), DockerHub (docker), or GitHub (git). Sunbeam was designed to be modular and extensible, allowing anyone to build off the core functionality. To read more, check out [our paper in Microbiome](https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-019-0658-x).
 
 Sunbeam currently automates the following tasks:
 

sunbeam/__init__.py

@@ -2,7 +2,7 @@
 from pathlib import Path
 
 
-__version__ = "5.0.0.c"
+__version__ = "5.0.1"
 __author__ = "Erik Clarke"
 __license__ = "GPL2+"