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Issues: bids-standard/pybids

RFC: PyBIDS 1.0 layout API
#989 opened Apr 25, 2023 by effigies
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Issues list

Add type hints to PyBIDS
#1130 opened Apr 26, 2025 by maximemulder
scope not assigned when loading a derivative directory directly
#1129 opened Apr 20, 2025 by eric-d-knowles
Is it possible to group Subjects (Patients) to reduce number of folders in the root of dataset for very large databases?
#1126 opened Mar 21, 2025 by eulerleibniz
sourcedata indexed on Windows bug windows
#1111 opened Dec 9, 2024 by kaare-mikkelsen
1
UPath kwargs are not persisted from layout root to BIDSFiles bug
#1098 opened Nov 11, 2024 by effigies
sqlite3.OperationalError: table associations already exists
#1079 opened Aug 11, 2024 by MRIDude
4
"fmap" pseudo-entity complicates logic for reconstructing fieldmap filenames
#1072 opened Jul 19, 2024 by psadil
1
BIDSLayoutIndexer's **filters argument not working as expected
#1062 opened May 10, 2024 by alperkent
6
Inherited metadata overrides immediate metadata for multi-echo data with same-named single-echo bug
#1044 opened Feb 19, 2024 by tsalo
1
Collect entity-linked files in get_associations enhancement
#1043 opened Feb 14, 2024 by tsalo
Custom configurations are not passed to derivatives indexer bug
#1020 opened Aug 28, 2023 by pierre-nedelec
9
RFC: PyBIDS 1.0 layout API discussion
#989 opened Apr 25, 2023 by effigies
8
ohbm hackathon idea: pybids (+analysis) in the browser
#982 opened Apr 14, 2023 by adelavega
3
layout.get not returning subject directory paths for datasets with no session layer bug
#978 opened Apr 10, 2023 by alyssadai
3
Support BIDS-URIs
#950 opened Feb 23, 2023 by effigies
2 tasks
1
Use trailing undescore to disambiguate entity names from python keywords
#947 opened Feb 15, 2023 by pvandyken
4
Allow de-meaning with respect to mean of a group statsmodels Pertain to implementation of BEP-002 - BIDS StatsModels transformations
#909 opened Oct 31, 2022 by effigies
Update type of Transformations._sync_kwargs to be containers/sequences
#889 opened Sep 6, 2022 by jdkent
1
Derivatives' configuration file missing some valuable entities
#880 opened Aug 3, 2022 by GalKepler
modeling: Add scan_length parameter to auto_model enhancement good for beginners
#868 opened Jun 7, 2022 by adelavega
variables: Add sparse/dense mode for to to_df, and add alternative design matrix API to access sparse variables statsmodels Pertain to implementation of BEP-002 - BIDS StatsModels variables
#865 opened Jun 1, 2022 by adelavega
@adelavega
3
statsmodel: separate validation within modeling question statsmodels Pertain to implementation of BEP-002 - BIDS StatsModels
#862 opened May 23, 2022 by adelavega
[pybids-core] Loading BIDSLayout with a path to a derivative folder
#857 opened May 13, 2022 by erdalkaraca
1
scan / run info not available to model? bug statsmodels Pertain to implementation of BEP-002 - BIDS StatsModels
#856 opened May 10, 2022 by adelavega
load_collections not loading variables in participants.tsv?
#855 opened May 6, 2022 by jdkent
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