chore: (deps): bump the pip group with 10 updates

[dependabot]

Updates the requirements on click, numpy, platformdirs, pyvista, vtk, joblib, ipywidgets, trame, trame-client and trame-vuetify to permit the latest version.
Updates click to 8.2.0

Release notes

Sourced from click's releases.

8.2.0

This is the Click 8.2.0 feature release. A feature release may include new features, remove previously deprecated code, add new deprecation, or introduce potentially breaking changes.

We encourage everyone to upgrade. You can read more about our Version Support Policy on our website.

PyPI: https://pypi.org/project/click/8.2.0/ Changes: https://click.palletsprojects.com/en/stable/changes/ Milestone https://github.com/pallets/click/milestone/15

• Drop support for Python 3.7, 3.8,and 3.9. #2588, #2893
• Use modern packaging metadata with pyproject.toml instead of setup.cfg. #2438
• Use flit_core instead of setuptools as build backend. #2543
• Deprecate the __version__ attribute. Use feature detection, or importlib.metadata.version("click"), instead. #2598
• BaseCommand is deprecated. Command is the base class for all commands. #2589
• MultiCommand is deprecated. Group is the base class for all group commands. #2590
• The current parser and related classes and methods, are deprecated. #2205
  • OptionParser and the parser module, which is a modified copy of optparse in the standard library.
  • Context.protected_args is unneeded. Context.args contains any remaining arguments while parsing.
  • Parameter.add_to_parser (on both Argument and Option) is unneeded. Parsing works directly without building a separate parser.
  • split_arg_string is moved from parser to shell_completion.
• Enable deferred evaluation of annotations with from __future__ import annotations. #2270
• When generating a command's name from a decorated function's name, the suffixes _command, _cmd, _group, and _grp are removed. #2322
• Show the types.ParamType.name for types.Choice options within --help message if show_choices=False is specified. #2356
• Do not display default values in prompts when Option.show_default is False. #2509
• Add get_help_extra method on Option to fetch the generated extra items used in get_help_record to render help text. #2516 #2517
• Keep stdout and stderr streams independent in CliRunner. Always collect stderr output and never raise an exception. Add a new output stream to simulate what the user sees in its terminal. Removes the mix_stderr parameter in CliRunner. #2522 #2523
• Option.show_envvar now also shows environment variable in error messages. #2695 #2696
• Context.close will be called on exit. This results in all Context.call_on_close callbacks and context managers added via Context.with_resource to be closed on exit as well. #2680
• Add ProgressBar(hidden: bool) to allow hiding the progressbar. #2609
• A UserWarning will be shown when multiple parameters attempt to use the same name. #2396
• When using Option.envvar with Option.flag_value, the flag_value will always be used instead of the value of the environment variable. #2746 #2788
• Add Choice.get_invalid_choice_message method for customizing the invalid choice message. #2621 #2622
• If help is shown because no_args_is_help is enabled (defaults to True for groups, False for commands), the exit code is 2 instead of 0. #1489 #1489
• Contexts created during shell completion are closed properly, fixing a ResourceWarning when using click.File. #2644 #2800 #2767
• click.edit(filename) now supports passing an iterable of filenames in case the editor supports editing multiple files at once. Its return type is now also typed: AnyStr if text is passed, otherwise None. #2067 #2068
• Specialized typing of progressbar(length=...) as ProgressBar[int]. #2630
• Improve echo_via_pager behaviour in face of errors. #2674
  • Terminate the pager in case a generator passed to echo_via_pager raises an exception.
  • Ensure to always close the pipe to the pager process and wait for it to terminate.
  • echo_via_pager will not ignore KeyboardInterrupt anymore. This allows the user to search for future output of the generator when using less and then aborting the program using ctrl-c.
• deprecated: bool | str can now be used on options and arguments. This previously was only available for Command. The message can now also be customised by using a str instead of a bool. #2263 #2271
  • Command.deprecated formatting in --help changed from (Deprecated) help to help (DEPRECATED).
  • Parameters cannot be required nor prompted or an error is raised.
  • A warning will be printed when something deprecated is used.
• Add a catch_exceptions parameter to CliRunner. If catch_exceptions is not passed to CliRunner.invoke, the value from CliRunner is used. #2817 #2818
• Option.flag_value will no longer have a default value set based on Option.default if Option.is_flag is False. This results in Option.default not needing to implement __bool__. #2829
• Incorrect click.edit typing has been corrected. #2804

... (truncated)

Changelog

Sourced from click's changelog.

Version 8.2.0

Released 2025-05-10

• Drop support for Python 3.7, 3.8, and 3.9. :pr:2588 :pr:2893

• Use modern packaging metadata with pyproject.toml instead of setup.cfg. :pr:2438

• Use flit_core instead of setuptools as build backend. :pr:2543

• Deprecate the __version__ attribute. Use feature detection, or importlib.metadata.version("click"), instead. :issue:2598

• BaseCommand is deprecated. Command is the base class for all commands. :issue:2589

• MultiCommand is deprecated. Group is the base class for all group commands. :issue:2590

• The current parser and related classes and methods, are deprecated. :issue:2205

  • OptionParser and the parser module, which is a modified copy of optparse in the standard library.
  • Context.protected_args is unneeded. Context.args contains any remaining arguments while parsing.
  • Parameter.add_to_parser (on both Argument and Option) is unneeded. Parsing works directly without building a separate parser.
  • split_arg_string is moved from parser to shell_completion.

• Enable deferred evaluation of annotations with from __future__ import annotations. :pr:2270

• When generating a command's name from a decorated function's name, the suffixes _command, _cmd, _group, and _grp are removed. :issue:2322

• Show the types.ParamType.name for types.Choice options within --help message if show_choices=False is specified. :issue:2356

• Do not display default values in prompts when Option.show_default is False. :pr:2509

• Add get_help_extra method on Option to fetch the generated extra items used in get_help_record to render help text. :issue:2516 :pr:2517

• Keep stdout and stderr streams independent in CliRunner. Always collect stderr output and never raise an exception. Add a new output stream to simulate what the user sees in its terminal. Removes the mix_stderr parameter in CliRunner. :issue:2522 :pr:2523

• Option.show_envvar now also shows environment variable in error messages. :issue:2695 :pr:2696

• Context.close will be called on exit. This results in all Context.call_on_close callbacks and context managers added via Context.with_resource to be closed on exit as well. :pr:2680

• Add ProgressBar(hidden: bool) to allow hiding the progressbar. :issue:2609

• A UserWarning will be shown when multiple parameters attempt to use the

... (truncated)

Commits

• 219206a release version 8.2.0
• 498f882 drop end of life python versions (#2893)
• ba770cb drop end of life python versions
• f14b750 update dev dependencies
• 9982fae Update CHANGES.rst
• 7318f5f Update CHANGES.rst
• b7c0ab4 Merge stable into main; Release 8.2.0 (#2873)
• c9b96fe Merge branch 'main' into main
• ab21233 Rewrite second half of options docs (#2848)
• 8c89a14 Merge branch 'main' into options_docs_2
• Additional commits viewable in compare view

Updates numpy to 2.2.6

Release notes

Sourced from numpy's releases.

v2.2.6 (May 17, 2025)

NumPy 2.2.6 Release Notes

NumPy 2.2.6 is a patch release that fixes bugs found after the 2.2.5 release. It is a mix of typing fixes/improvements as well as the normal bug fixes and some CI maintenance.

This release supports Python versions 3.10-3.13.

Contributors

A total of 8 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

• Charles Harris
• Ilhan Polat
• Joren Hammudoglu
• Marco Gorelli +
• Matti Picus
• Nathan Goldbaum
• Peter Hawkins
• Sayed Adel

Pull requests merged

A total of 11 pull requests were merged for this release.

• #28778: MAINT: Prepare 2.2.x for further development
• #28851: BLD: Update vendor-meson to fix module_feature conflicts arguments...
• #28852: BUG: fix heap buffer overflow in np.strings.find
• #28853: TYP: fix NDArray[floating] + float return type
• #28864: BUG: fix stringdtype singleton thread safety
• #28865: MAINT: use OpenBLAS 0.3.29
• #28889: MAINT: from_dlpack thread safety fixes
• #28913: TYP: Fix non-existent CanIndex annotation in ndarray.setfield
• #28915: MAINT: Avoid dereferencing/strict aliasing warnings
• #28916: BUG: Fix missing check for PyErr_Occurred() in _pyarray_correlate.
• #28966: TYP: reject complex scalar types in ndarray.__ifloordiv__

Checksums

MD5

259343f056061f6eadb2f4b8999d06d4  numpy-2.2.6-cp310-cp310-macosx_10_9_x86_64.whl
16fa85488e149489ce7ee044d7b0d307  numpy-2.2.6-cp310-cp310-macosx_11_0_arm64.whl
f01b7aea9d2b76b1eeb49766e615d689  numpy-2.2.6-cp310-cp310-macosx_14_0_arm64.whl
f2ddc2b22517f6e31caa1372b12c2499  numpy-2.2.6-cp310-cp310-macosx_14_0_x86_64.whl
52190e22869884f0870eb3df7a283ca9  numpy-2.2.6-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
8f382b9ca6770db600edd5ea2447a925  numpy-2.2.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
e604aae2ef6e01fb92ecc39aca0424d9  numpy-2.2.6-cp310-cp310-musllinux_1_2_aarch64.whl

... (truncated)

Changelog

Sourced from numpy's changelog.

This is a walkthrough of the NumPy 2.1.0 release on Linux, modified for building with GitHub Actions and cibuildwheels and uploading to the anaconda.org staging repository for NumPy <https://anaconda.org/multibuild-wheels-staging/numpy>_. The commands can be copied into the command line, but be sure to replace 2.1.0 by the correct version. This should be read together with the :ref:general release guide <prepare_release>.

Facility preparation

Before beginning to make a release, use the requirements/*_requirements.txt files to ensure that you have the needed software. Most software can be installed with pip, but some will require apt-get, dnf, or whatever your system uses for software. You will also need a GitHub personal access token (PAT) to push the documentation. There are a few ways to streamline things:

• Git can be set up to use a keyring to store your GitHub personal access token. Search online for the details.
• You can use the keyring app to store the PyPI password for twine. See the online twine documentation for details.

Prior to release

Add/drop Python versions

When adding or dropping Python versions, three files need to be edited:

• .github/workflows/wheels.yml # for github cibuildwheel
• tools/ci/cirrus_wheels.yml # for cibuildwheel aarch64/arm64 builds
• pyproject.toml # for classifier and minimum version check.

Make these changes in an ordinary PR against main and backport if necessary. Add [wheel build] at the end of the title line of the commit summary so that wheel builds will be run to test the changes. We currently release wheels for new Python versions after the first Python rc once manylinux and cibuildwheel support it. For Python 3.11 we were able to release within a week of the rc1 announcement.

Backport pull requests

Changes that have been marked for this release must be backported to the maintenance/2.1.x branch.

Update 2.1.0 milestones

... (truncated)

Commits

• 2b686f6 Merge pull request #28980 from charris/prepare-2.2.6
• ed41828 REL: Prepare for the NumPy 2.2.6 release [wheel build]
• 83e4e7f Merge pull request #28966 from charris/backport-28958
• 248f0cb TYP: add rejection-tests for complex ndarray floordiv
• 5bad9da TYP: reject complex scalar types in ndarray.__ifloordiv__
• 6c42775 Merge pull request #28915 from charris/backport-28892
• 4277e7c Merge pull request #28916 from charris/backport-28898
• bd1c863 BUG: Fix missing check for PyErr_Occurred() in _pyarray_correlate. (#28898)
• 87d1d8a MAINT: Avoid dereferencing/strict aliasing warnings during complex casts in `...
• 9e50659 Merge pull request #28913 from charris/backport-28908
• Additional commits viewable in compare view

Updates platformdirs to 4.3.8

Release notes

Sourced from platformdirs's releases.

4.3.8

What's Changed

• Add missing examples and fix order of examples in README by @​gene1wood in tox-dev/platformdirs#355

New Contributors

• @​gene1wood made their first contribution in tox-dev/platformdirs#355

Full Changelog: tox-dev/platformdirs@4.3.7...4.3.8

Changelog

Sourced from platformdirs's changelog.

platformdirs Changelog

The changes of more recent versions are tracked here <https://github.com/tox-dev/platformdirs/releases>_.

platformdirs 4.0.0 (2023-11-10)

• UNIX: revert site_cache_dir to use /var/cache instead of /var/tmp

platformdirs 3.8.1 (2023-07-06)

• BSD: provide a fallback for user_runtime_dir

platformdirs 3.8.0 (2023-06-22)

• Add missing user media directory docs

platformdirs 3.7.0 (2023-06-20)

• Have user_runtime_dir return /var/run/user/uid for *BSD

platformdirs 3.6.0 (2023-06-19)

• introduce user_downloads_dir

platformdirs 3.5.3 (2023-06-09)

• Use ruff

platformdirs 3.5.2 (2023-05-30)

• test with 3.12.0.b1

platformdirs 3.5.1 (2023-05-11)

• Add 3.12 support
• Add tox.ini to sdist
• removing Windows versions
• Better handling for UNIX support

platformdirs 3.5.0 (2023-04-27)

• introduce user_music_dir

platformdirs 3.4.0 (2023-04-26)

• introduce user_videos_dir

platformdirs 3.3.0 (2023-04-25)

... (truncated)

Commits

• 22089f1 Add missing examples and fix order of examples in README (#355)
• 29398b1 [pre-commit.ci] pre-commit autoupdate (#354)
• 70114b0 [pre-commit.ci] pre-commit autoupdate (#353)
• 4891611 [pre-commit.ci] pre-commit autoupdate (#351)
• 707be6f Bump astral-sh/setup-uv from 5 to 6 in the all group (#352)
• 5519a4f [pre-commit.ci] pre-commit autoupdate (#349)
• 063275e [pre-commit.ci] pre-commit autoupdate (#346)
• 39fc384 [pre-commit.ci] pre-commit autoupdate (#345)
• 00c695b [pre-commit.ci] pre-commit autoupdate (#342)
• 6a81b38 [pre-commit.ci] pre-commit autoupdate (#341)
• Additional commits viewable in compare view

Updates pyvista to 0.45.2

Release notes

Sourced from pyvista's releases.

v0.45.2

What's Changed

Bug fixes or behavior changes

Full Changelog: pyvista/pyvista@v0.45.1...v0.45.2

Commits

• 617d76d Bump version 0.45.2
• b4a450c Move check for sys.meta_path in DisableVtkSnakeCase (#7512)
• f28b68a Disable vtk's snake case API for all PyVista classes (#7509)
• c0a57bf Fix streamlines ref (#7510)
• 9bd695c Bump version 0.45.1
• b5c06c8 Use dependency groups instead of extras for installing dev dependencies (#7459)
• 7415f42 Add links to PyVista methods inside Sphinx Gallery code blocks (#7452)
• 20f7d10 Add mapper utilities to handle deprecated calls for VTK 9.5 (#7433)
• 775f684 update merge docstring (#7499)
• 08994cd Fix wrapped source in documentation (#7492)
• Additional commits viewable in compare view

Updates vtk to 9.4.2

Updates joblib to 1.5.0

Changelog

Sourced from joblib's changelog.

Release 1.5.0 -- 2025/05/03

Memory:

- Enforce ``age_limit`` is a positive timedelta for ``Memory.reduce_size``,
  to avoid silently ignoring it.
  https://github.com/joblib/joblib/pull/1613


Remove deprecated bytes_limit argument for Memory, which should

be passed directly to Memory.reduce_size.

joblib/joblib#1569


Extend functionality of the check_call_in_cache method to now also

check against cache validity. Before, it would only check for a given call

if it is in cache memory.

joblib/joblib#1584


The Memory object now automatically creates a .gitignore file in its cache

directory, instructing git to ignore the entire folder.

joblib/joblib#1674


Parallel:

• Fixed a bug that caused the timeout parameter in joblib.Parallel to be ineffective when used along with return_as='generator_unordered'. joblib/joblib#1586

• Pretty printing of Parallel execution progress when the number of tasks is known. joblib/joblib#1608

• Make it possible to pass extra arguments to the LokyBackend and MultiprocessingBackend, enabling the use of initializer. joblib/joblib#1525

• Refactor and document the custom parallel backend API. joblib/joblib#1667

Maintenance:

- Drop support for Python 3.8.
  https://github.com/joblib/joblib/pull/1669


Support for Python 3.13 free-threaded has been added.

joblib/joblib#1589


Drop support for PyPy.

</tr></table>

... (truncated)

Commits

• e347c92 RELEASE 1.5 (#1719)
• 03c3f66 FIX run tests with only one cpu (#1715)
• df4403f FIX update test_manual_scatter to check consistence between dask backend and ...
• 8515638 MNT use protocol=5 for dumping arrays with dtype=object (#1682)
• 863994d FIX issue in memmap reducing when base array is 1d (#1704)
• deee7f5 FIX workaround for numpy.core DeprecationWarning (#1714)
• 031b902 MTN vendor loky 3.5.2 (#1711)
• 3aa56cc ENH allow passing extra args to backend constructor, enabling the use of init...
• 71c2ce7 FIX typo in memory.rst (#1700)
• 6eeef50 FIx typo in the parallel doc (#1701)
• Additional commits viewable in compare view

Updates ipywidgets to 8.1.7

Release notes

Sourced from ipywidgets's releases.

8.1.7

What's Changed

• Fix CI + remove Python 3.8 by @​martinRenou in jupyter-widgets/ipywidgets#3989
• Dynamic widgets registry by @​martinRenou in jupyter-widgets/ipywidgets#3988

Full Changelog: jupyter-widgets/ipywidgets@8.1.6...8.1.7

Commits

• 3171b1c Update Output Widget.ipynb (#3881)
• cd81783 update image processing example notebok imports and function call (#3896)
• cecd2b0 specify Jupyterlab (version 3.x or above) (#3880)
• 0aa1efb Allow interact to use basic type hint annotations (#3908)
• 2e15cfc Update Widget List.ipynb
• 06ed868 Merge pull request #3793 from ferdnyc/mappings-work-again
• 31259ca Merge pull request #3801 from warrickball/patch-2
• dd250bf Handle Notebook 7 in dev install script
• a1282ec Fix link to "Output widget examples"
• b6b3051 Revert "Add note on removal of mapping types in documentation"
• Additional commits viewable in compare view

Updates trame to 3.9.0

Release notes

Sourced from trame's releases.

v3.9.0 (2025-04-25)

Bug Fixes

• client: Bump client to get v_on (863c052)

• import: Circular import in trame.app (61c5960)

Code Style

• ruff: Import sort (b7a4ce8)

• ruff: Reformat helper scripts (5190d77)

Documentation

• discussion: Add example 707 (a684a5b)

• examples: Fix image path in readmes (37a9e38)

• examples: Images (0c154b2)

• examples: Images (9c7618b)

• examples: Images (0bc5c30)

• examples: Images (26c69da)

• examples: Images (daed428)

• examples: Reformat using ruff and sorting import (74b0276)

Features

• common: Leverage trame-common for utility class/function (61b60a9)

New Features: - Add dependency to trame-common for providing generic classes that can be relevant across trame packages. This includes assets handling, execution helper (throttle, async task), decorators and abstract classes for building components or apps. - Expose new TrameApp and TrameComponent classes from trame.app to simplify the creation of trame pieces when using inheritance instead of the @​TrameApp() decorator.

Deprecation and cleanup - trame.app.dev should be deprecated/removed but for now we just remove a method that has been broken for quite some time. In general that package is fairly advanced and internal. It should not be needed by 99.99% of folks. - trame.app.jupyter has been removed since the Jupyter integration is directly part of the layouts and that package should not be used anymore.

Testing

• Update endlines (834fab6)

---

Detailed Changes: v3.8.2...v3.9.0

Changelog

Sourced from trame's changelog.

v3.9.0 (2025-04-25)

Bug Fixes

• client: Bump client to get v_on (863c052)

• import: Circular import in trame.app (61c5960)

Code Style

• ruff: Import sort (b7a4ce8)

• ruff: Reformat helper scripts (5190d77)

Documentation

• discussion: Add example 707 (a684a5b)

• examples: Fix image path in readmes (37a9e38)

• examples: Images (0c154b2)

• examples: Images (9c7618b)

• examples: Images (0bc5c30)

• examples: Images (26c69da)

• examples: Images (daed428)

• examples: Reformat using ruff and sorting import (74b0276)

Features

• common: Leverage trame-common for utility class/function (61b60a9)

New Features: - Add dependency to trame-common for providing generic classes that can be

... (truncated)

Commits

• fc0235b 3.9.0
• 863c052 fix(client): bump client to get v_on
• 61c5960 fix(import): circular import in trame.app
• b7a4ce8 style(ruff): import sort
• 834fab6 test: update endlines
• 5190d77 style(ruff): reformat helper scripts
• 74b0276 docs(examples): reformat using ruff and sorting import
• 61b60a9 feat(common): leverage trame-common for utility class/function
• 37a9e38 docs(examples): fix image path in readmes
• 0c154b2 docs(examples): images
• Additional commits viewable in compare view

Updates trame-client to 3.9.0

Release notes

Sourced from trame-client's releases.

v3.9.0 (2025-05-09)

Bug Fixes

• html: New generated html widgets (c2e5c84)

Features

• html: Update html/vue available components (b3652d2)

---

Detailed Changes: v3.8.2...v3.9.0

Changelog

Sourced from trame-client's changelog.

v3.9.0 (2025-05-09)

Bug Fixes

• html: New generated html widgets (c2e5c84)

Features

• html: Update html/vue available components (b3652d2)

v3.8.2 (2025-05-06)

Bug Fixes

• event: Remove scroll, resize, select from default (804206e)

v3.8.1 (2025-04-28)

Bug Fixes

• model/bind/event: Fix event and directive processing (c6f6138)

• mouse-event: Add missing enter/leave (dadd593)

v3.8.0 (2025-04-24)

Documentation

• Update links in readme (8e3e204)

Features

• v_on: Better handling events modifiers (942cbe3)

v3.7.1 (2025-04-10)

Bug Fixes

• DeepReactive: Delete removed key

... (truncated)

Commits

• 4773891 3.9.0
• c2e5c84 fix(html): new generated html widgets
• b3652d2 feat(html): update html/vue available components
• aa84d52 3.8.2
• 804206e fix(event): remove scroll, resize, select from default
• 89f97c3 3.8.1
• c6f6138 fix(model/bind/event): fix event and directive processing
• dadd593 fix(mouse-event): add missing enter/leave
• e778509 3.8.0
• 942cbe3 feat(v_on): better handling events modifiers
• Additional commits viewable in compare view

Updates trame-vuetify to 3.0.1

Release notes

Sourced from trame-vuetify's releases.

v3.0.1 (2025-04-14)

Bug Fixes

• deps: Bump minimal version of trame-client (1f25385)

Continuous Integration

• Fix pages deployment job (5a0fc3b)

Documentation

• Update links in readme (01a06e6)

---

Detailed Changes: v3.0.0...v3.0.1

Changelog

Sourced from trame-vuetify's changelog.

v3.0.1 (2025-04-14)

Bug Fixes

• deps: Bump minimal version of trame-client (1f25385)

Continuous Integration

• Fix pages deployment job (5a0fc3b)

Documentation

• Update links in readme (01a06e6)

v3.0.0 (2025-04-07)

Features

• v2.8: Andromeda (2514130)

v2.9.0 (2025-03-28)

Features

• v3.7.19: Update vuetify and add missing fonts (cc62ae2)

v2.8.2 (2025-03-25)

Bug Fixes

• copyright: Update copyright dates (a53d702)

v2.8.1 (2025-01-23)

Bug Fixes

• Replace applymap with map for dataframe serialization (ac30ba3)

Documentation

... (truncated)

Commits

• c4baeda 3.0.1
• 1f25385 fix(deps): bump minimal version of trame-client
• 01a06e6 docs: update links in readme
• 5a0fc3b ci: fix pages deployment job
• 98da0d9 3.0.0
• 2514130 feat(v2.8)!: Andromeda
• b0a96f4 2.9.0
• cc62ae2 feat(v3.7.19): update vuetify and add missing fonts
• 19b2ddc 2.8.2
• ba1273b Merge pull request #17 from Jo-Byr/update-copyright-dates
• Additional commits viewable in compare view

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[geovista-ci]

🤖 Bleep! Bloop!

Dependabot[bot] pull-request auto-approved 👍

[dependabot]

This pull request was built based on a group rule. Closing it will not ignore any of these versions in future pull requests.

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