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Issues list

Error in cliDef@subclasses : no applicable method for @ applied to an object of class "NULL" bug Something isn't working
#755 opened May 6, 2025 by Ramelanson
Problem with graph_test() in R4.5.0 bug Something isn't working
#754 opened May 1, 2025 by Sububioinfo
❗️R session crashes on preprocess_cds() with both full and subset data bug Something isn't working
#753 opened Apr 23, 2025 by evanbio
1
cds <- preprocess_cds(cds, num_dim = 100) bug Something isn't working
#752 opened Apr 4, 2025 by seekning
matrixStats error with using align_cds
#751 opened Mar 7, 2025 by marktopus
3
There seems to be no parameter in plot_cells to remove the border of the point bug Something isn't working
#750 opened Feb 26, 2025 by huyulan-funan
Problem with graph_test()
#749 opened Jan 31, 2025 by itscharliemu
Discrete time values after pseudotime
#748 opened Jan 20, 2025 by roanvanscheppingen
top_markers() error: 'list' object cannot be coerced to type 'double'
#747 opened Jan 20, 2025 by soo-ni42
Monocle 3 using Seurat object and PHATE
#746 opened Jan 16, 2025 by Yanst86
1
Problems with root_cells
#745 opened Jan 16, 2025 by Angle28
Problems with root_cells
#744 opened Jan 16, 2025 by Angle28
Monocl3 BUG！Error in plot_genes_in_pseudotime(cds[genes_sig, ], color_cells_by = "celltype", : unused argument(color_cells_by = "celltype") bug Something isn't working
#743 opened Dec 10, 2024 by CampingOnSeabed
Gene connectivity within each module bug Something isn't working
#741 opened Nov 25, 2024 by sang-15
Interpretation of plots(repetitive numbers)
#740 opened Nov 25, 2024 by jingsday
Support of inverse of preprocess_cds bug Something isn't working
#739 opened Oct 22, 2024 by MUCDK
orderCells function fails due to deprecated nei() call** bug Something isn't working
#738 opened Oct 20, 2024 by weissnichtwo
7
ERROR: dependencies ‘sf’, ‘spdep’ are not available for package ‘monocle3’ bug Something isn't working
#737 opened Oct 19, 2024 by xiaoli-gg
5
Installing Monocle3 on my windows laptop bug Something isn't working
#736 opened Sep 27, 2024 by seattlescientist
Installation problem bug Something isn't working
#735 opened Sep 24, 2024 by HSvitina
graph_test error: Error in (function (..., row.names = NULL, check.rows = FALSE, check.names = TRUE, : row names supplied are of the wrong length bug Something isn't working
#733 opened Sep 5, 2024 by alexisweber
1
export monocle graph
#732 opened Aug 20, 2024 by anke-king
reduce_dimension error : address (nil), cause 'memory not mapped' bug Something isn't working
#731 opened Aug 14, 2024 by Donbbit
Minimum number of transcripts to infer trajectory
#730 opened Aug 6, 2024 by Psrwnsr
When conditioned specific cells are present： bug Something isn't working
#728 opened Jul 8, 2024 by metaspine
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