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junjunlab/README.md

Welcome to my home 👋

Hi, I'm Jun Zhang, a Ph.D. candidate at China Pharmaceutical University (CPU). Currently, I'm focusing on NGS (Next-Generation Sequencing) data analysis and actively developing bioinformatics tools. I'm passionate about computational biology and constantly exploring new programming languages and skills including R, Python, Julia, and Linux. With curiosity at heart, I'm also on a personal journey to discover the deeper meaning of life.

I'm currently working in the field of epigenetics and sequencing data analysis. Most of my projects involve working with ATAC-seq, ChIP-seq, MeRIP-seq, and Ribo-seq data to investigate how gene expression is regulated at different layers — from chromatin accessibility to RNA modifications and translation. I love combining wet-lab insight with computational tools to dig deeper into biological questions.

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Shiny tools

shiny of pheatmap shiny of VennDiagram shiny of volcanoPlot shiny of qPCR shiny of qPCRpro shiny of clusterProfiler shiny of CountToTPM/FPKM

R packages

riboTransVis ORFfinderR bulkPseudotime JunJunZai metaplot ggSCvis ggcirclize ggChIPvis RiboProfiler BioSeqUtils ClusterGVis jjPlot jjAnno transPlotR GseaVis scRNAtoolVis tackPlotR

Python packages

GetTransTool GetGeneLength GetTsite

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  1. riboTransVis riboTransVis Public

    A Package for Ribosome Profiling Data Analysis

    R 10

  2. ClusterGvis-app ClusterGvis-app Public

    An interactive tool for ClusterGvis

    R 7

  3. ClusterGVis ClusterGVis Public

    One-step to Cluster and Visualize Gene Expression Matrix

    R 293 26

  4. ggSCvis ggSCvis Public

    Visualizing SingleCell data Using GGplot2

    R 32 2

  5. scRNAtoolVis scRNAtoolVis Public

    Useful functions to make your scRNA-seq plot more cool!

    R 334 30

  6. GseaVis GseaVis Public

    An implement R package to visualize GSEA results

    R 166 16