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Replace MyGene API with BioThings client in WF2 #76

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kennethbruskiewicz opened this issue May 22, 2019 · 1 comment
Open
Tracked by #1

Replace MyGene API with BioThings client in WF2 #76

kennethbruskiewicz opened this issue May 22, 2019 · 1 comment
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@kennethbruskiewicz
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Right now WF2's setup requires the MyGene client, and drawing the MyGene client from PyPI gives you a blank MyGene object which makes the code fail to import the module.

It seems like that the team deprecated MyGene Client for a more general BioThings client.
biothings/mygene.py#7

Replace the MyGene client with the BioThings client and test the outcome.

@kennethbruskiewicz kennethbruskiewicz self-assigned this May 22, 2019
@newgene
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newgene commented May 22, 2019

I tested pip install -r requirements.txt locally, it installs mygene module correctly and import mygene works fine for me as well.

The requirements.txt is from here

mygene module now depends on biothings_client, but it should be transparent. biothings_client module will be installed automatically.

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