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@nfdi4plants

DataPLANT

Services and infrastructures to support #FAIRData science and good data management practices within the plant basic research community. #NFDI.

Hi there 👋 We are DataPLANT

Our mission: Driving the digital change in plant science

DataPLANT’s mission is to provide a sustainable and well annotated data management platform for plant sciences. DataPLANT will pave the way from classical paper publication to pure data publication including the Annotated Research Context (ARC)

The community

DataPlant is primarily geared towards the needs of fundamental plant research (e.g. those represented by the DFG categories 202-[01 evolution and systematics of plants and animals, 04 plant physiology, 05 plant biochemistry and biophysics, 06 plant cell and developmental biology, 07 plant genetics]. As such DataPlant is especially adapter to large scale data sets be it omics science or imaging and is ready to store petabaytes of annotated data.

The Annotated Research Context (ARC)

DataPlant will allow users to store their data in form of an annotated research context. This includes not only the measurement data, but also (meta)data annotations, tools, and scripts. This will allow reproducibility plus to forward “raw data” and metadata slices to public repositories (e.g. EBI NCBI etc.).

More info at https://www.nfdi4plants.org/

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  1. ARCitect ARCitect Public

    Cross-platform app to create and manage ARCs.

    Vue 9 7

  2. DataHUB DataHUB Public

    This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.

    Shell 3 3

  3. ARC-specification ARC-specification Public

    16 13

  4. Swate Swate Public

    Excel Add-In for annotation of experimental data and computational workflows.

    F# 40 8

  5. ARCtrl ARCtrl Public

    Polyglot (.NET/JS/Python) library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

    F# 17 9

  6. dataplan dataplan Public template

    DataPLAN is a Data Management Plan (DMP) generator developed by DataPLANT

    JavaScript 7 10

Repositories

Showing 10 of 85 repositories
  • nfdi4plants_ontology Public

    An intermediate ontology for plants used by DataPLANT to fill the ontology gap

    nfdi4plants/nfdi4plants_ontology’s past year of commit activity
    F# 7 CC-BY-4.0 11 3 1 Updated May 20, 2025
  • elab2arc Public

    A tool to convert electronic lab notebook experiments to Annotated Research Context (ARC) assays

    nfdi4plants/elab2arc’s past year of commit activity
    HTML 0 2 3 0 Updated May 20, 2025
  • ARCtrl Public

    Polyglot (.NET/JS/Python) library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

    nfdi4plants/ARCtrl’s past year of commit activity
    F# 17 MIT 9 36 (1 issue needs help) 1 Updated May 20, 2025
  • arcmanager_backend Public

    FastAPI backend for the ARCmanager.

    nfdi4plants/arcmanager_backend’s past year of commit activity
    Python 0 AGPL-3.0 0 0 0 Updated May 20, 2025
  • Swate Public

    Excel Add-In for annotation of experimental data and computational workflows.

    nfdi4plants/Swate’s past year of commit activity
    F# 40 MIT 8 26 1 Updated May 20, 2025
  • dataplan Public template

    DataPLAN is a Data Management Plan (DMP) generator developed by DataPLANT

    nfdi4plants/dataplan’s past year of commit activity
    JavaScript 7 GPL-3.0 10 4 0 Updated May 18, 2025
  • nfdi4plants.github.io Public

    DataPLANT website made with Astro 🚀

    nfdi4plants/nfdi4plants.github.io’s past year of commit activity
    Astro 5 MIT 17 3 1 Updated May 18, 2025
  • swate-template-registry Public

    A collection of templates for Swate (https://github.com/nfdi4plants/Swate).

    nfdi4plants/swate-template-registry’s past year of commit activity
    C# 5 MIT 19 12 1 Updated May 16, 2025
  • training-material Public

    Training material of DataPLANT workshops and classes

    nfdi4plants/training-material’s past year of commit activity
    HTML 0 CC-BY-4.0 4 1 0 Updated May 16, 2025
  • nfdi4plants.knowledgebase Public

    This is the source repo for the nfdi4plants knowledge base webpage.

    nfdi4plants/nfdi4plants.knowledgebase’s past year of commit activity
    MDX 4 CC-BY-4.0 32 9 0 Updated May 14, 2025

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