RHOAIENG-17257: chore(tests): add testcontainers test to check Rmd to PDF rendering in RStudio

[jiridanek]

https://issues.redhat.com/browse/RHOAIENG-17257

Description

How Has This Been Tested?

This passes with

--image=ghcr.io/jiridanek/notebooks/workbench-images:rstudio-c9s-python-3.11-jd_ipv6_test_512e959935af50afde2c1fa49706207190fb5e8d

and fails with

--image=ghcr.io/jiridanek/notebooks/workbench-images:rstudio-c9s-python-3.11-main_fe3641a01ac9e1e8f694f1a8bce3b34cacf9ae57

with error that's beginning the same as what's in the screenshot that @shalberd reported in

• rendering Rmd Markup to pdf not working #794

DEBUG:root:Command execution finished >>> {"rc": 1, "result": "

processing file: document.Rmd
1/7           
2/7 [setup]   
3/7           
4/7 [cars]    
5/7           
6/7 [pressure]
7/7           
output file: document.knit.md

/usr/lib/rstudio-server/bin/quarto/bin/tools/x86_64/pandoc +RTS -K512m -RTS document.knit.md --to latex --from markdown+autolink_bare_uris+tex_math_single_backslash --output document.tex --lua-filter /opt/app-root/bin/Rpackages/4.4/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /opt/app-root/bin/Rpackages/4.4/rmarkdown/rmarkdown/lua/latex-div.lua --embed-resources --standalone --highlight-style tango --pdf-engine pdflatex --variable graphics --variable 'geometry:margin=1in' 
! LaTeX Error: File `framed.sty' not found.

! Emergency stop.
<read *> 

! kpathsea: Running mktexfmt pdflatex.fmt
! mktexfmt: mktexfmt is using the following fmtutil.cnf files (in precedence order):
! mktexfmt:   /usr/share/texlive/texmf-dist/web2c/fmtutil.cnf
! mktexfmt: mktexfmt is using the following fmtutil.cnf file for writing changes:
! mktexfmt:   /opt/app-root/src/.texlive2020/texmf-config/web2c/fmtutil.cnf
! mktexfmt [INFO]: writing formats under /opt/app-root/src/.texlive2020/texmf-var/web2c
! mktexfmt [INFO]: --- remaking pdflatex with pdftex
! mktexfmt: running `pdftex -ini   -jobname=pdflatex -progname=pdflatex -translate-file=cp227.tcx *pdflatex.ini' ...
! This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (INITEX)
!  restricted \\write18 enabled.
!  (/usr/share/texlive/texmf-dist/web2c/cp227.tcx)
! entering extended mode
! (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/pdflatex.ini
! (/usr/share/texlive/texmf-dist/tex/generic/tex-ini-files/pdftexconfig.tex)
! (/usr/share/texlive/texmf-dist/tex/latex/base/latex.ltx
! (/usr/share/texlive/texmf-dist/tex/latex/base/texsys.cfg)
! ./texsys.aux found

[...]

! 17292 multiletter control sequences

! \\font\
ullfont=nullfont

! \\font\\c__fp_exp_intarray=cmr10 at 0.00002pt

! \\font\\c__fp_trig_intarray=cmr10 at 0.00003pt

! \\font\\c_initex_cctab=cmr10 at 0.00005pt

! \\font\\c_other_cctab=cmr10 at 0.00006pt

! \\font\\c_str_cctab=cmr10 at 0.00008pt

! \\font\\g__regex_state_active_intarray=cmr10 at 0.00009pt

! \\font\\g__regex_thread_info_intarray=cmr10 at 0.0001pt

! \\font\\g__regex_submatch_prev_intarray=cmr10 at 0.00012pt

! \\font\\g__regex_submatch_begin_intarray=cmr10 at 0.00014pt

! \\font\\g__regex_submatch_end_intarray=cmr10 at 0.00015pt

! \\font\\g__regex_balance_intarray=cmr10 at 0.00017pt

! \\font\\OMX/cmex/m/n/10=cmex10

! \\font\\tenln=line10

! \\font\\tenlnw=linew10

! \\font\\tencirc=lcircle10

! \\font\\tencircw=lcirclew10

! \\font\\OT1/cmr/m/n/5=cmr5

! \\font\\OT1/cmr/m/n/7=cmr7

! \\font\\OT1/cmr/m/n/10=cmr10

! \\font\\OML/cmm/m/it/5=cmmi5

! \\font\\OML/cmm/m/it/7=cmmi7

! \\font\\OML/cmm/m/it/10=cmmi10

! \\font\\OMS/cmsy/m/n/5=cmsy5

! \\font\\OMS/cmsy/m/n/7=cmsy7

! \\font\\OMS/cmsy/m/n/10=cmsy10

! \\font\\c_code_cctab=cmr10 at 0.00018pt

! \\font\\c_document_cctab=cmr10 at 0.0002pt

! 403423 words of font info for 27 preloaded fonts

! 14 hyphenation exceptions

! Hyphenation trie of length 6081 has 183 ops out of 35111

!   2 for language 1

!   181 for language 0

! 0 words of pdfTeX memory

! 0 indirect objects

! No pages of output.

! Transcript written on pdflatex.log.

! mktexfmt [INFO]: log file copied to: /opt/app-root/src/.texlive2020/texmf-var/web2c/pdftex/pdflatex.log

! mktexfmt [INFO]: /opt/app-root/src/.texlive2020/texmf-var/web2c/pdftex/pdflatex.fmt installed.

! mktexfmt [INFO]: successfully rebuilt formats: 1

! mktexfmt [INFO]: not selected formats: 19

! mktexfmt [INFO]: total formats: 20

! mktexfmt [INFO]: exiting with status 0

Error: LaTeX failed to compile document.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See document.log for more info.
Execution halted

Merge criteria:

• The commits are squashed in a cohesive manner and have meaningful messages.
• Testing instructions have been added in the PR body (for PRs involving changes that are not immediately obvious).
• The developer has manually tested the changes and verified that the changes work

[jiridanek]

/override ci/prow/images
n/a

[openshift-ci]

@jiridanek: Overrode contexts on behalf of jiridanek: ci/prow/images

In response to this:

/override ci/prow/images
n/a

Instructions for interacting with me using PR comments are available here. If you have questions or suggestions related to my behavior, please file an issue against the kubernetes-sigs/prow repository.

[jstourac]

Instead of copying this again, wouldn't it be better to copy these files to the final directory right away?

[jiridanek]

very good point, fixed it now
/override ci/prow/images

[jstourac]

this method and the check_call above seem both quite generic - maybe we should consider to put them on some common place... I don't insist to do this in this PR, but maybe eventually...

[jiridanek]

• this method and the check_call above seem both quite generic - maybe we should consider to put them on some common place... I don't insist to do this in this PR, but maybe eventually... #859

[openshift-ci]

@jiridanek: Overrode contexts on behalf of jiridanek: ci/prow/images

In response to this:

very good point, fixed it now
/override ci/prow/images

Instructions for interacting with me using PR comments are available here. If you have questions or suggestions related to my behavior, please file an issue against the kubernetes-sigs/prow repository.

[jiridanek]

/override ci/prow/images

[openshift-ci]

@jiridanek: Overrode contexts on behalf of jiridanek: ci/prow/images

In response to this:

/override ci/prow/images

Instructions for interacting with me using PR comments are available here. If you have questions or suggestions related to my behavior, please file an issue against the kubernetes-sigs/prow repository.

[jiridanek]

/approve

[openshift-ci]

[APPROVALNOTIFIER] This PR is APPROVED

This pull-request has been approved by: jiridanek

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[jstourac]

/lgtm

thank you

[jiridanek]

/override ci/prow/images
not relevant

[openshift-ci]

@jiridanek: Overrode contexts on behalf of jiridanek: ci/prow/images

In response to this:

/override ci/prow/images
not relevant

Instructions for interacting with me using PR comments are available here. If you have questions or suggestions related to my behavior, please file an issue against the kubernetes-sigs/prow repository.