Skip to content

simplified code in application_prediction.get_weighted_ligand_target_links #13

simplified code in application_prediction.get_weighted_ligand_target_links

simplified code in application_prediction.get_weighted_ligand_target_links #13

Triggered via pull request February 18, 2025 15:56
Status Failure
Total duration 1h 27m 25s
Artifacts 5

check-standard.yaml

on: pull_request
Matrix: check-standard
Fit to window
Zoom out
Zoom in

Annotations

51 errors and 50 warnings
ubuntu-latest (oldrel-1)
Can't combine `..1$weight` <double[,22]> and `..3$weight` <double[,12]>.
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
trying to use CRAN without setting a mirror
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
there is no package called ‘nsga2R’
ubuntu-latest (oldrel-1)
Can't combine `..1$weight` <double[,31]> and `..2$weight` <double[,42]>.
macos-latest (release)
Can't combine `..1$weight` <double[,22]> and `..3$weight` <double[,12]>.
macos-latest (release)
Can't combine `..1$weight` <double[,63]> and `..2$weight` <double[,53]>.
macos-latest (release)
The total size of the 19 globals exported for future expression (‘FUN()’) is 2.81 GiB.. This exceeds the maximum allowed size of 500.00 MiB (option 'future.globals.maxSize'). The three largest globals are ‘FUN’ (2.54 GiB of class ‘function’), ‘raw_umi’ (272.22 MiB of class ‘S4’) and ‘model_pars_fit’ (1.72 MiB of class ‘list’)
macos-latest (release)
Can't combine `..1$weight` <double[,19]> and `..2$weight` <double[,17]>.
macos-latest (release)
there is no package called ‘DiagrammeRsvg’
macos-latest (release)
trying to use CRAN without setting a mirror
macos-latest (release)
Can't select columns that don't exist.
macos-latest (release)
there is no package called ‘nsga2R’
macos-latest (release)
cannot read from connection
macos-latest (release)
Can't combine `..1$weight` <double[,31]> and `..2$weight` <double[,42]>.
macos-latest (release)
No such keg: /opt/homebrew/Cellar/[email protected]
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
trying to use CRAN without setting a mirror
windows-latest (release)
cannot read from connection
windows-latest (release)
there is no package called 'nsga2R'
windows-latest (release)
cannot read from connection
ubuntu-latest (release)
Can't combine `..1$weight` <double[,22]> and `..3$weight` <double[,12]>.
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
Can't combine `..1$weight` <double[,63]> and `..2$weight` <double[,53]>.
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
trying to use CRAN without setting a mirror
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
there is no package called ‘nsga2R’
ubuntu-latest (release)
Can't combine `..1$weight` <double[,31]> and `..2$weight` <double[,42]>.
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
Can't combine `..1$weight` <double[,63]> and `..2$weight` <double[,53]>.
ubuntu-latest (devel)
Can't combine `..1$weight` <double[,19]> and `..2$weight` <double[,17]>.
ubuntu-latest (devel)
there is no package called ‘DiagrammeRsvg’
ubuntu-latest (devel)
trying to use CRAN without setting a mirror
ubuntu-latest (devel)
Can't select columns that don't exist.
ubuntu-latest (devel)
there is no package called ‘nsga2R’
ubuntu-latest (devel)
Can't combine `..1$weight` <double[,31]> and `..2$weight` <double[,42]>.
ubuntu-latest (devel)
Can't combine `..1$weight` <double[,59]> and `..2$weight` <double[,43]>.
ubuntu-latest (oldrel-1)
Cache not found for keys: Ubuntu 24.04.1 LTS-R version 4.3.3 (2024-02-29)-1-9bac9a04c222493e507269644e3d74c1b83a7a80aac3d10f9e363bf69a2a0f3d, Ubuntu 24.04.1 LTS-R version 4.3.3 (2024-02-29)-1-
ubuntu-latest (oldrel-1)
'::' or ':::' imports not declared from:
ubuntu-latest (oldrel-1)
get_expressed_genes:
ubuntu-latest (oldrel-1)
Missing link or links in documentation object 'get_ligand_target_links_oi.Rd':
ubuntu-latest (oldrel-1)
Functions or methods with usage in documentation object 'get_optimized_parameters_nsga2r' but not in code:
ubuntu-latest (oldrel-1)
Documented arguments not in \usage in documentation object 'get_lfc_celltype':
ubuntu-latest (oldrel-1)
LazyData DB of 5.8 MB without LazyDataCompression set
ubuntu-latest (oldrel-1)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (oldrel-1)
Directory 'inst/doc' does not exist.
macos-latest (release)
Cache not found for keys: macOS Sonoma 14.7.2-R version 4.4.2 (2024-10-31)-1-4ddb6a128ff975a0429bc094b00f63d1ba42e26c4465f20331cb43d1922e7075, macOS Sonoma 14.7.2-R version 4.4.2 (2024-10-31)-1-
macos-latest (release)
'::' or ':::' imports not declared from:
macos-latest (release)
get_expressed_genes:
macos-latest (release)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
macos-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
macos-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
macos-latest (release)
LazyData DB of 5.8 MB without LazyDataCompression set
macos-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
macos-latest (release)
Directory 'inst/doc' does not exist.
macos-latest (release)
the standard deviation is zero
macos-latest (release)
pkgconf 2.3.0_1 is already installed and up-to-date. To reinstall 2.3.0_1, run: brew reinstall pkgconf
macos-latest (release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
windows-latest (release)
Cache not found for keys: Windows Server 2022 x64 (build 20348)-R version 4.4.2 (2024-10-31 ucrt)-1-1c5ab0cdc8f59b68998c5fd48e0bc07910dc0077305dc0f7d51cda4633caf6b6, Windows Server 2022 x64 (build 20348)-R version 4.4.2 (2024-10-31 ucrt)-1-
windows-latest (release)
'::' or ':::' imports not declared from:
windows-latest (release)
get_expressed_genes:
windows-latest (release)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
windows-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
windows-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
windows-latest (release)
LazyData DB of 5.5 MB without LazyDataCompression set
windows-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
windows-latest (release)
Directory 'inst/doc' does not exist.
ubuntu-latest (release)
Cache not found for keys: Ubuntu 24.04.1 LTS-R version 4.4.2 (2024-10-31)-1-e0c77669f940c5bdc8b7d9ba272d2becb469d6c95a1d236c18bc485f7a940381, Ubuntu 24.04.1 LTS-R version 4.4.2 (2024-10-31)-1-
ubuntu-latest (release)
'::' or ':::' imports not declared from:
ubuntu-latest (release)
get_expressed_genes:
ubuntu-latest (release)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (release)
LazyData DB of 5.5 MB without LazyDataCompression set
ubuntu-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (release)
Directory 'inst/doc' does not exist.
ubuntu-latest (release)
the standard deviation is zero
ubuntu-latest (devel)
Cache not found for keys: Ubuntu 24.04.1 LTS-R version 4.5.0 (ge:16; iid:2fdf6c18-697a-4ba7-b8ef-11c0d92f1327)-1-c5caa5c781a9878f05dbae2d06c87a2831faefab626af6887ca69e2a0af2ad6a, Ubuntu 24.04.1 LTS-R version 4.5.0 (ge:16; iid:2fdf6c18-697a-4ba7-b8ef-11c0d92f1327)-1-
ubuntu-latest (devel)
'::' or ':::' imports not declared from:
ubuntu-latest (devel)
get_expressed_genes:
ubuntu-latest (devel)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (devel)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (devel)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (devel)
LazyData DB of 5.5 MB without LazyDataCompression set
ubuntu-latest (devel)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (devel)
Directory 'inst/doc' does not exist.
ubuntu-latest (devel)
the standard deviation is zero

Artifacts

Produced during runtime
Name Size Digest
Linux-X64-rdevel-2-results
47.4 MB
sha256:7735242103b1c6bdcad8ccbdc722976759b4ba30a0b7e9469e5e0cb437ee9eaa
Linux-X64-roldrel-1-4-results
43.5 MB
sha256:28f47acbd2e3751d0d4028d2709794b38d10d83587f162287816b4b2c5e825ac
Linux-X64-rrelease-3-results
43.2 MB
sha256:637573c3af5312084797a7f65f6cd258192b7ca98a3ef91eb64c02da4354c3ce
Windows-X64-rrelease-1-results
43.2 MB
sha256:63ec9bbeda06f2ed31b00c14c99eeb4df97f1de181d2298071c83f7f8380b676
macOS-ARM64-rrelease-0-results
43.5 MB
sha256:cfe90819f75bd2147ce933c8d1fb007a9e975d8ba84fb4d7727ae8500f9adf4b