fixed the error in check-bioc.yml #20
Triggered via pull request
April 24, 2025 11:08
Status
Success
Total duration
1h 31m 23s
Artifacts
–
Annotations
50 errors and 41 warnings
macos-latest (release)
cannot read from connection
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macos-latest (release)
cannot read from connection
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macos-latest (release)
cannot read from connection
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macos-latest (release)
cannot read from connection
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macos-latest (release)
there is no package called ‘nsga2R’
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macos-latest (release)
Can't select columns that don't exist.
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macos-latest (release)
trying to use CRAN without setting a mirror
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macos-latest (release)
there is no package called ‘DiagrammeRsvg’
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macos-latest (release)
cannot read from connection
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macos-latest (release)
The total size of the 19 globals exported for future expression (‘FUN()’) is 2.81 GiB. This exceeds the maximum allowed size 500.00 MiB per by R option "future.globals.maxSize". This limit is set to protect against transfering too large objects to parallel workers by mistake, which may not be intended and could be costly. See help("future.globals.maxSize", package = "future") for further explainations and how to adjust or remove this threshold The three largest globals are ‘FUN’ (2.54 GiB of class ‘function’), ‘raw_umi’ (272.22 MiB of class ‘S4’) and ‘model_pars_fit’ (1.72 MiB of class ‘list’)
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windows-latest (release)
cannot read from connection
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windows-latest (release)
cannot read from connection
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windows-latest (release)
there is no package called 'nsga2R'
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windows-latest (release)
Can't select columns that don't exist.
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windows-latest (release)
trying to use CRAN without setting a mirror
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windows-latest (release)
there is no package called 'DiagrammeRsvg'
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windows-latest (release)
cannot read from connection
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windows-latest (release)
cannot read from connection
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windows-latest (release)
cannot read from connection
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windows-latest (release)
cannot read from connection
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ubuntu-latest (release)
cannot read from connection
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ubuntu-latest (release)
cannot read from connection
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ubuntu-latest (release)
cannot read from connection
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ubuntu-latest (release)
there is no package called ‘nsga2R’
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ubuntu-latest (release)
cannot read from connection
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ubuntu-latest (release)
trying to use CRAN without setting a mirror
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ubuntu-latest (release)
there is no package called ‘DiagrammeRsvg’
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ubuntu-latest (release)
cannot read from connection
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ubuntu-latest (release)
cannot read from connection
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ubuntu-latest (release)
cannot read from connection
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ubuntu-latest (oldrel-1)
cannot read from connection
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ubuntu-latest (oldrel-1)
cannot read from connection
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ubuntu-latest (oldrel-1)
there is no package called ‘nsga2R’
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ubuntu-latest (oldrel-1)
Can't select columns that don't exist.
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ubuntu-latest (oldrel-1)
trying to use CRAN without setting a mirror
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ubuntu-latest (oldrel-1)
there is no package called ‘DiagrammeRsvg’
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ubuntu-latest (oldrel-1)
cannot read from connection
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ubuntu-latest (oldrel-1)
cannot read from connection
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ubuntu-latest (oldrel-1)
cannot read from connection
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ubuntu-latest (oldrel-1)
cannot read from connection
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ubuntu-latest (devel)
cannot read from connection
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ubuntu-latest (devel)
there is no package called ‘nsga2R’
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ubuntu-latest (devel)
cannot read from connection
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ubuntu-latest (devel)
trying to use CRAN without setting a mirror
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ubuntu-latest (devel)
there is no package called ‘DiagrammeRsvg’
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ubuntu-latest (devel)
cannot read from connection
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ubuntu-latest (devel)
cannot read from connection
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ubuntu-latest (devel)
cannot read from connection
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ubuntu-latest (devel)
cannot read from connection
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ubuntu-latest (devel)
cannot read from connection
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macos-latest (release)
The `slot` argument of `GetAssayData()` is deprecated as of SeuratObject 5.0.0.
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macos-latest (release)
Directory 'inst/doc' does not exist.
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macos-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
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macos-latest (release)
LazyData DB of 5.5 MB without LazyDataCompression set
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macos-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
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macos-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
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macos-latest (release)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
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macos-latest (release)
get_expressed_genes:
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macos-latest (release)
'::' or ':::' imports not declared from:
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windows-latest (release)
Directory 'inst/doc' does not exist.
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windows-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
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windows-latest (release)
LazyData DB of 5.5 MB without LazyDataCompression set
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windows-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
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windows-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
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windows-latest (release)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
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windows-latest (release)
get_expressed_genes:
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windows-latest (release)
'::' or ':::' imports not declared from:
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ubuntu-latest (release)
Directory 'inst/doc' does not exist.
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ubuntu-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
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ubuntu-latest (release)
LazyData DB of 5.5 MB without LazyDataCompression set
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ubuntu-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
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ubuntu-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
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ubuntu-latest (release)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
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ubuntu-latest (release)
get_expressed_genes:
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ubuntu-latest (release)
'::' or ':::' imports not declared from:
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ubuntu-latest (oldrel-1)
Directory 'inst/doc' does not exist.
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ubuntu-latest (oldrel-1)
Files in the 'vignettes' directory but no files in 'inst/doc':
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ubuntu-latest (oldrel-1)
LazyData DB of 5.5 MB without LazyDataCompression set
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ubuntu-latest (oldrel-1)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
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ubuntu-latest (oldrel-1)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
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ubuntu-latest (oldrel-1)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
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ubuntu-latest (oldrel-1)
get_expressed_genes:
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ubuntu-latest (oldrel-1)
'::' or ':::' imports not declared from:
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ubuntu-latest (devel)
Directory 'inst/doc' does not exist.
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ubuntu-latest (devel)
Files in the 'vignettes' directory but no files in 'inst/doc':
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ubuntu-latest (devel)
LazyData DB of 5.5 MB without LazyDataCompression set
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ubuntu-latest (devel)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
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ubuntu-latest (devel)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
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ubuntu-latest (devel)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
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ubuntu-latest (devel)
get_expressed_genes:
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ubuntu-latest (devel)
'::' or ':::' imports not declared from:
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