Skip to content

Remove package networks #27

Remove package networks

Remove package networks #27

Triggered via pull request April 29, 2025 07:25
Status Failure
Total duration 1h 19m 31s
Artifacts 5

check-standard.yaml

on: pull_request
Matrix: check-standard
Fit to window
Zoom out
Zoom in

Annotations

50 errors and 50 warnings
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot read from connection
macos-latest (release)
there is no package called ‘nsga2R’
macos-latest (release)
cannot read from connection
macos-latest (release)
trying to use CRAN without setting a mirror
macos-latest (release)
there is no package called ‘DiagrammeRsvg’
macos-latest (release)
The total size of the 19 globals exported for future expression (‘FUN()’) is 2.81 GiB. This exceeds the maximum allowed size 500.00 MiB per by R option "future.globals.maxSize". This limit is set to protect against transfering too large objects to parallel workers by mistake, which may not be intended and could be costly. See help("future.globals.maxSize", package = "future") for further explainations and how to adjust or remove this threshold The three largest globals are ‘FUN’ (2.54 GiB of class ‘function’), ‘raw_umi’ (272.22 MiB of class ‘S4’) and ‘model_pars_fit’ (1.72 MiB of class ‘list’)
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
there is no package called ‘nsga2R’
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
trying to use CRAN without setting a mirror
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
there is no package called ‘nsga2R’
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
trying to use CRAN without setting a mirror
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
there is no package called 'nsga2R'
windows-latest (release)
cannot read from connection
windows-latest (release)
trying to use CRAN without setting a mirror
windows-latest (release)
there is no package called 'DiagrammeRsvg'
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
The total size of the 19 globals exported for future expression ('FUN()') is 2.81 GiB. This exceeds the maximum allowed size 500.00 MiB per by R option "future.globals.maxSize". This limit is set to protect against transfering too large objects to parallel workers by mistake, which may not be intended and could be costly. See help("future.globals.maxSize", package = "future") for further explainations and how to adjust or remove this threshold The three largest globals are 'FUN' (2.54 GiB of class 'function'), 'raw_umi' (272.22 MiB of class 'S4') and 'model_pars_fit' (1.72 MiB of class 'list')
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
there is no package called ‘nsga2R’
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
trying to use CRAN without setting a mirror
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
macos-latest (release)
Assay RNA changing from Assay to Assay
macos-latest (release)
The `slot` argument of `GetAssayData()` is deprecated as of SeuratObject 5.0.0.
macos-latest (release)
Directory 'inst/doc' does not exist.
macos-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
macos-latest (release)
LazyData DB of 5.3 MB without LazyDataCompression set
macos-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
macos-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
macos-latest (release)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
macos-latest (release)
get_expressed_genes:
macos-latest (release)
'::' or ':::' imports not declared from:
ubuntu-latest (release)
DimReduc cca changing from DimReduc to DimReduc
ubuntu-latest (release)
Assay RNA changing from Assay to Assay
ubuntu-latest (release)
Directory 'inst/doc' does not exist.
ubuntu-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (release)
LazyData DB of 5.3 MB without LazyDataCompression set
ubuntu-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (release)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (release)
get_expressed_genes:
ubuntu-latest (release)
'::' or ':::' imports not declared from:
ubuntu-latest (oldrel-1)
DimReduc cca changing from DimReduc to DimReduc
ubuntu-latest (oldrel-1)
Assay RNA changing from Assay to Assay
ubuntu-latest (oldrel-1)
Directory 'inst/doc' does not exist.
ubuntu-latest (oldrel-1)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (oldrel-1)
LazyData DB of 5.3 MB without LazyDataCompression set
ubuntu-latest (oldrel-1)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (oldrel-1)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (oldrel-1)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (oldrel-1)
get_expressed_genes:
ubuntu-latest (oldrel-1)
'::' or ':::' imports not declared from:
windows-latest (release)
Assay RNA changing from Assay to Assay
windows-latest (release)
The `slot` argument of `GetAssayData()` is deprecated as of SeuratObject 5.0.0.
windows-latest (release)
Directory 'inst/doc' does not exist.
windows-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
windows-latest (release)
LazyData DB of 5.3 MB without LazyDataCompression set
windows-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
windows-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
windows-latest (release)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
windows-latest (release)
get_expressed_genes:
windows-latest (release)
'::' or ':::' imports not declared from:
ubuntu-latest (devel)
DimReduc cca changing from DimReduc to DimReduc
ubuntu-latest (devel)
Assay RNA changing from Assay to Assay
ubuntu-latest (devel)
Directory 'inst/doc' does not exist.
ubuntu-latest (devel)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (devel)
LazyData DB of 5.3 MB without LazyDataCompression set
ubuntu-latest (devel)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (devel)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (devel)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (devel)
get_expressed_genes:
ubuntu-latest (devel)
'::' or ':::' imports not declared from:

Artifacts

Produced during runtime
Name Size Digest
Linux-X64-rdevel-2-results
42.6 MB
sha256:ad3d546997c7fe3badf6caa325563153a8355a7dce65a94ca8e0ccd5e98255a0
Linux-X64-roldrel-1-4-results
42.6 MB
sha256:a53b94dd6e149be193f51f58bbda9582f0b9ef35ca0230f5dc394590f2fda091
Linux-X64-rrelease-3-results
42.6 MB
sha256:993fdd84ad3d4f76362b43d68bec41c93c48fb980a23984aa662effc52362ed9
Windows-X64-rrelease-1-results
42.6 MB
sha256:a9897eeffbea2534348571b1e9a542f609c8446b218a50f20fb4bf7bcc4433a7
macOS-ARM64-rrelease-0-results
42.6 MB
sha256:4d77a95fd9e310a57f3b6d5fe57aa07ac22e41dcd845aa2346a2d1bda67861c3