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Remove package networks #30

Remove package networks

Remove package networks #30

Triggered via pull request April 29, 2025 11:38
Status Failure
Total duration 1h 38m 8s
Artifacts 5

check-standard.yaml

on: pull_request
Matrix: check-standard
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50 errors and 50 warnings
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot read from connection
macos-latest (release)
cannot read from connection
macos-latest (release)
there is no package called ‘nsga2R’
macos-latest (release)
cannot read from connection
macos-latest (release)
trying to use CRAN without setting a mirror
macos-latest (release)
there is no package called ‘DiagrammeRsvg’
macos-latest (release)
cannot read from connection
macos-latest (release)
The total size of the 19 globals exported for future expression (‘FUN()’) is 2.81 GiB. This exceeds the maximum allowed size 500.00 MiB per by R option "future.globals.maxSize". This limit is set to protect against transfering too large objects to parallel workers by mistake, which may not be intended and could be costly. See help("future.globals.maxSize", package = "future") for further explainations and how to adjust or remove this threshold The three largest globals are ‘FUN’ (2.54 GiB of class ‘function’), ‘raw_umi’ (272.22 MiB of class ‘S4’) and ‘model_pars_fit’ (1.72 MiB of class ‘list’)
macos-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
there is no package called 'nsga2R'
windows-latest (release)
Can't select columns that don't exist.
windows-latest (release)
trying to use CRAN without setting a mirror
windows-latest (release)
there is no package called 'DiagrammeRsvg'
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
windows-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
there is no package called ‘nsga2R’
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
trying to use CRAN without setting a mirror
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
there is no package called ‘nsga2R’
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
trying to use CRAN without setting a mirror
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (oldrel-1)
cannot read from connection
ubuntu-latest (devel)
R CMD check found ERRORs
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
there is no package called ‘nsga2R’
ubuntu-latest (devel)
Can't select columns that don't exist.
ubuntu-latest (devel)
trying to use CRAN without setting a mirror
ubuntu-latest (devel)
there is no package called ‘DiagrammeRsvg’
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
cannot read from connection
macos-latest (release)
Assay RNA changing from Assay to Assay
macos-latest (release)
The `slot` argument of `GetAssayData()` is deprecated as of SeuratObject 5.0.0.
macos-latest (release)
Directory 'inst/doc' does not exist.
macos-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
macos-latest (release)
LazyData DB of 5.3 MB without LazyDataCompression set
macos-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
macos-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
macos-latest (release)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
macos-latest (release)
get_expressed_genes:
macos-latest (release)
'::' or ':::' imports not declared from:
windows-latest (release)
DimReduc cca changing from DimReduc to DimReduc
windows-latest (release)
Assay RNA changing from Assay to Assay
windows-latest (release)
Directory 'inst/doc' does not exist.
windows-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
windows-latest (release)
LazyData DB of 5.3 MB without LazyDataCompression set
windows-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
windows-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
windows-latest (release)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
windows-latest (release)
get_expressed_genes:
windows-latest (release)
'::' or ':::' imports not declared from:
ubuntu-latest (release)
DimReduc cca changing from DimReduc to DimReduc
ubuntu-latest (release)
Assay RNA changing from Assay to Assay
ubuntu-latest (release)
Directory 'inst/doc' does not exist.
ubuntu-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (release)
LazyData DB of 5.3 MB without LazyDataCompression set
ubuntu-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (release)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (release)
get_expressed_genes:
ubuntu-latest (release)
'::' or ':::' imports not declared from:
ubuntu-latest (oldrel-1)
DimReduc cca changing from DimReduc to DimReduc
ubuntu-latest (oldrel-1)
Assay RNA changing from Assay to Assay
ubuntu-latest (oldrel-1)
Directory 'inst/doc' does not exist.
ubuntu-latest (oldrel-1)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (oldrel-1)
LazyData DB of 5.3 MB without LazyDataCompression set
ubuntu-latest (oldrel-1)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (oldrel-1)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (oldrel-1)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (oldrel-1)
get_expressed_genes:
ubuntu-latest (oldrel-1)
'::' or ':::' imports not declared from:
ubuntu-latest (devel)
DimReduc cca changing from DimReduc to DimReduc
ubuntu-latest (devel)
Assay RNA changing from Assay to Assay
ubuntu-latest (devel)
Directory 'inst/doc' does not exist.
ubuntu-latest (devel)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (devel)
LazyData DB of 5.3 MB without LazyDataCompression set
ubuntu-latest (devel)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (devel)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (devel)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (devel)
get_expressed_genes:
ubuntu-latest (devel)
'::' or ':::' imports not declared from:

Artifacts

Produced during runtime
Name Size Digest
Linux-X64-rdevel-2-results
42.6 MB
sha256:8fa891a53c0f4483b77b3e7dfc08d28321cfa07d8ba888b5b15a50f417985dfa
Linux-X64-roldrel-1-4-results
42.6 MB
sha256:140738aa3fb614a62a67f3895aa2a54331f17a89e2e48c0890c5f5c24b39805b
Linux-X64-rrelease-3-results
42.6 MB
sha256:0ed7f57849d851e4c5a16077d739a38027c8c4600bb3f7055eb8772d750e27e3
Windows-X64-rrelease-1-results
42.6 MB
sha256:6a7ee621bfbaee6c0ccf62ac391a090ceac852b6b324b5d0a947e1740c2a1cc8
macOS-ARM64-rrelease-0-results
42.6 MB
sha256:125ce1174a37e923670753b19ca06fbeae25013846c7a0c9fcdd5f809401a94b