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Issues: satijalab/seurat
Solution for
as_cholmod_sparse and CRsparse_rowSums errors
#8202
opened Dec 18, 2023 by
dcollins15
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BUG: DimPlot ignores the reduction parameter if multiple reductions have the same key
bug
Something isn't working
#9872
opened May 5, 2025 by
nigiord
BUG: Reference assay is SCT, but query assay is RNA. Mixing SCT and non-SCT in FindTransferAnchors is not supported.
bug
Something isn't working
#9871
opened May 5, 2025 by
crippathais
BUG: Error in integration with Seurat v5 after subsetting specific cluster
bug
Something isn't working
#9870
opened May 4, 2025 by
K-S-J-P
Question about FindNeighbors & FindClusters & RunUMAP & graph.name
#9867
opened May 1, 2025 by
Xiangyi-Deng
Missing "SCT" assay in "mousecortexref" Azimuth reference causes RunAzimuth() to fai
bug
Something isn't working
#9865
opened Apr 30, 2025 by
BenjaminDEMAILLE
BUG: Error in Something isn't working
reference[["SCT"]]: ! 'SCT' not found in this Seurat object
bug
#9864
opened Apr 30, 2025 by
sameet
Bug: Error when subsetting Seurat object — missing "images" slot
bug
Something isn't working
#9863
opened Apr 30, 2025 by
BenjaminDEMAILLE
ScaleData() fails with “all cells in assays must be present in the Seurat object” error
#9860
opened Apr 29, 2025 by
BenjaminDEMAILLE
Deprecation warnings when using FindAllMarkers with SeuratObject 5.0.0
#9859
opened Apr 29, 2025 by
BenjaminDEMAILLE
Discrepancy Between Seurat DESeq2 Wrapper and Standalone DESeq2 Results for Pseudobulk DEG Analysis
#9858
opened Apr 29, 2025 by
lisbeth-dot-95
BUG: Error in Something isn't working
LeverageScore(): ! too slow -- only after upgrading to Seurat 5.3.0
bug
#9857
opened Apr 28, 2025 by
lhoranportelance
Seurat5.2.1:Error in Something isn't working
IntegrateLayers(): ! 'assay' must be a v5 or SCT assay
bug
#9856
opened Apr 28, 2025 by
hejiale0911
Inquiry about JackStraw compatibility with sketch workflow and reduction naming
#9855
opened Apr 28, 2025 by
erlun1
BUG: <insert-descriptive-title> FoldChange in Seurat v5.2.1 does not compute correctly
bug
Something isn't working
#9854
opened Apr 26, 2025 by
WubingZhang
BUG: deprecated feature of SeuratObject
bug
Something isn't working
#9852
opened Apr 25, 2025 by
JarickW
BUG: Something isn't working
PackageCheck() was deprecated in SeuratObject 5.0.0.
bug
#9850
opened Apr 25, 2025 by
almuir94
BUG: <SCTransform results are not reproducible when the random seed is set prior to SCTransform() call >
bug
Something isn't working
#9821
opened Apr 17, 2025 by
NikTuzov
BUG: Identities colors are different in VlnPlot for mutiple genes when sort=TRUE
bug
Something isn't working
#9818
opened Apr 16, 2025 by
marcopretti
Feature Request: add back plot_convergence to Harmony
enhancement
New feature or request
#9815
opened Apr 11, 2025 by
NadineBestard
Feature Request: Improve DimHeatmap documentation and add PC number title for ggplot2 output
enhancement
New feature or request
#9810
opened Apr 10, 2025 by
dkcoxie
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