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Pull requests: satijalab/seurat

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Pull requests list

Feature: Updates for Space Ranger 4.0
#9978 opened Jul 1, 2025 by stephenwilliams22 • Draft
5 tasks
11
Add support for Vizgen objects for InteractiveSpatialPlot
#9977 opened Jul 1, 2025 by YoukaiFromAccounting Loading…
update broken link
#9976 opened Jul 1, 2025 by attja Loading…
DONOTMERGE Test PR: Removed all internal deprecated slot calls in Get/SetAssayData
#9971 opened Jun 30, 2025 by YoukaiFromAccounting Loading…
DONOTMERGE Test PR: Fix incorrect factor level ordering when clustering with PCA/UMAP
#9967 opened Jun 26, 2025 by YoukaiFromAccounting Loading…
DONOTMERGE Test PR: Interactive Spatial Plot for Subsetting Cells
#9966 opened Jun 26, 2025 by YoukaiFromAccounting Loading…
Fix SpecificDimPlot when call includes Seurat::
#9964 opened Jun 25, 2025 by samuel-marsh Loading…
changes made to view the pages on the lower side
#9934 opened Jun 6, 2025 by abhilashdasari Loading…
Add option to use igraph for leiden clustering
#9931 opened Jun 5, 2025 by samuel-marsh Loading…
4
Add uwot::umap2 support
#9918 opened Jun 1, 2025 by samuel-marsh Loading…
1
FindConservedMarkers update to filter out nan p values
#9917 opened May 30, 2025 by AtSourav Loading…
Harmonizing PackageCheck
#9914 opened May 30, 2025 by samuel-marsh Loading…
fix LabelClusters split.by warning
#9841 opened Apr 23, 2025 by kew24 Loading…
Improves DimHeatmap documentation and default behavior when fast=FALSE (Issue #9810)
#9813 opened Apr 10, 2025 by dkcoxie Loading…
1
Update interaction link
#9741 opened Mar 10, 2025 by attja Loading…
add function readMM_fast
#9731 opened Mar 6, 2025 by freeseek Loading…
feature: updates for cellranger 9.0
#9541 opened Dec 10, 2024 by stephenwilliams22 Loading…
30
Fix DimPlot convenience function logic (#9436)
#9493 opened Nov 18, 2024 by rharao Loading…
Add uwot.approx_pow option to RunUMAP for better reproducibility
#9449 opened Nov 1, 2024 by daskelly Loading…
Fix ggplot2 deprecation warning in DotPlot()
#9409 opened Oct 18, 2024 by Billsfriend Loading…
Added the functionality of scale.factor in NormalizeData being set to "median" of counts
#9389 opened Oct 11, 2024 by pranavm2109 Loading…
Add Option to Plot Percentage of Variance Explained in ElbowPlot Func…
#8929 opened May 24, 2024 by moi-taiga Loading…
1
Sketch Data Improvement
#8913 opened May 18, 2024 by Sandman-1 Loading…
Fixed min.cells.group issue in FindConservedMarkers()
#8910 opened May 17, 2024 by hamelyz Loading…
Fix PercentageFeatureSet
#8659 opened Mar 20, 2024 by maxim-h Loading…
3
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